Wrapper to fit various network embedding methods — fit_network_embedding • nerfplus

Wrapper to fit various network embedding methods

Usage

fit_network_embedding(
  A,
  ndim = 2,
  method = c("adjacency", "laplacian", "score"),
  regularization = 0.5,
  varimax_rotation = FALSE
)

Arguments

A: Adjacency matrix.
ndim: Number of dimensions in embedding.
method: Embedding type(s), at least one of "adjacency", "laplacian", or score".
regularization: Regularization parameter for the adjacency matrix.
varimax_rotation: Whether to apply varimax rotation to the embedding.

Value

A list containing the following components:

X: A list of matrices, each corresponding to a method in method, where each matrix has ndim columns representing the embedding.
eval_ls: A list of eigenvalues corresponding to each method in method.
method: The method(s) used for embedding.
regularization: The regularization parameter used for the adjacency matrix.

Examples

data(example_data)
embedding_fit <- fit_network_embedding(
  example_data$A, ndim = 2, method = "laplacian"
)